Set of articles in the field of Computational Biology and Bioinformatics
The use of computational tools for data preprocessing and analysis is daily activity for any bioinformatician. Having a interdisciplinary field, a plethora of tools exist in the domain, written by developers from various fields and languages. Many times there can be multiple candidate tools exists to accomplish any given task. Often it is the decision …
Molecular docking is an essential process in scientific drug discovery. By using the recent advances in generative deep learning the runtime required for such docking studies can be reduced significantly without comprimising accuracy compared to traditional methods. In this article, let us get familiarize ourselves with one open-source molecular docking codebase. The codebase named DiffDock …
The Jupyter Notebook is best suited for doing as well as documenting empirical research. It can contain text, code images, videos, interactive content, and also nicely typesetting equations. This makes anyone doing simulations or empirical research prototype their work and share it with their colleagues. In this blog post, I am going to show how …
Visualizing 3D Protein Structures and Exporting Into images Using Jupyter Notebook. Read More »
Graphical User Interface (GUI) has been useful and easy to use for all types of computer users. We all use it every day to get things done. However, the computing history has the provision to do command-line instructions also to do the same things. Let us take a few examples where one beats the other. …
In one of our earlier posts, we have seen how we can visually relate the parts of the one-dimensional Gaussian distribution equation. In this post, we will follow the same strategy to understand the terms that comes up with a Multivariable Gaussian distribution. We will focus on the Bivariate Gaussian distribution as distributions of higher-order …
Gaussian distribution appears in various parts of science and engineering. Apart from a distribution often appear in nature, it has got important properties such as its relation to Central Limit Theorem (CLT). The figure above shows one-dimensional Gaussian distributions of various mean and variance values. Libraries like NumPy provide functions that can return Gaussian distribution …
A Markov Decision Process (MDP) is a mathematical framework used to model decision-making situations where the outcome of a decision depends on both the current state of the system and the actions taken by the decision maker. In an MDP, the decision maker is represented as an agent, and the system is represented as a …
This article shows two key visual intuitions behind the usage of a discount factor in reinforcement learning with image, code, and video. Introduction Most of the advances in science and technology happened in the last 100 years. We can see mind-boggling progress in automotive, medicine, communication, energy, etc. . Among these advances, some technologies shake …
In summertime when I go out, I don’t take the raincoat with me. On what basis am I not expecting it to rain during summer?. Isn’t it my past experience gives me that knowledge and estimate the outcome?. The expected value in probability theory leverages such a pattern in data to make a good representation …
This tutorial is on the typesetting language called LaTeX. LaTeX is useful when it comes to creating complex documents like thesis, project reports, research articles, etc. We will see the basic use-cases in around 22 examples. LaTeX Installation Instructions Windows In Windows, you need to install two programs called MiKTeX and TeXstudio. Please be careful to install …